Pirate can't use 2nd job skill points on job advance

This problem carries over all the way into 4th job. After the recent patch, my corsair gets an error when I try placing points into 4th job skills, saying that I'm missing 1st/2nd/3rd job points. It's lvl 160 and already has all but 5 of the 4th job SP already allocated.

In other pirate-y glitches, booster can no longer be used while on ship.